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Automated Model Construction and Genome Annotation for Large-Scale Metabolic Networks

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The Swiss Initiative in Systems Biology

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Select	Left	Rev	Right	MNXref ID	Enzy
	1 Cardiolipin (dihexadecanoyl, dimethylstearoyl) + 1 glycerol cytoplasm	<=>	2 Phosphatidylglycerol (hexadecanoyl, methylstearoyl) cytoplasm	MNXR96785	-- Select -- CRLS_MYCTU
	1 Phosphatidylglycerol (hexadecanoyl, methylstearoyl) + 1 phosphate cytoplasm	<?>	1 H2O + 1 Phosphatidylglycerophosphate (hexadecanoyl, tuberculostearoyl, C16:0, C19:0) cytoplasm	MNXR102564
	0.000977 Undecaprenyl-diphospho-N-glycolylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala + 0.13571 L-threonine + 0.01885 Peptidoglycan subunit (for Mycobacterium tuberculosis) + 0.0008 a reduced ferredoxin [iron-sulfur] cluster + 0.0008 an oxidized ferredoxin [iron-sulfur] cluster + 60 H2O + 0.058352 hexacosanoate + 0.20583 L-valine + 0.0118 menaquinol-8 + 0.034837 octadecanoate + 0.0008 thiamine diphosphate + 0.0102 dATP + 0.015676 eicosanoate + 0.33581 glycine + 0.012193 tetradecanoate + 0.004061 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine + 0.0194 dGTP + 0.0194 dCTP + 0.05812 L-glutamine + 0.0102 dTTP + 60 ATP + 0.006474 2-O-sulfo-alpha,alpha-trehalose + 0.003492 dAMP + 0.001488 Acyl phosphatidylinositol mannoside di-mannose (tuberculosis) + 0.006491 alpha,alpha-trehalose 6-phosphate + 0.006798 1,2-sn-glycerol 3-phosphate + 0.005859 Cardiolipin (dihexadecanoyl, dimethylstearoyl) + 0.0136 NADP(+) + 0.001681 a 1,2-diacyl-sn-glycero-3-phospho-[alpha-D-6-acyl-mannopyranosyl-(1<->6)-D-myo-inositol] + 0.001335 Acyl phosphatidylinositol mannoside tri-mannose (tuberculosis) + 0.0008 Fe(2+) + 0.0008 Fe(3+) + 0.0131 mycothiol + 0.0132 CoA + 0.001008 Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine + 0.087731 L-isoleucine + 0.00724 1,2-dihexadecanoyl-sn-glycero-3-phosphate + 0.0184 glycerol + 0.2352 1,4-alpha-D-glucan + 0.006487 dipalmitoyl phosphatidylglycerol + 0.2326 L-serine + 0.0008 Heme A + 0.022 L-cysteine + 0.2352 Glycogen + 0.034889 L-methionine + 0.12042 L-arginine + 0.000986 Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala + 0.090007 L-glutamate + 0.020124 L-tryptophan + 0.048102 L-phenylalanine + 0.00784 Methyl behenic acid + 0.01885 Peptidoglycan subunit (for Mycobacterium tuberculosis) + 0.006453 Phenol palmitic acid + 0.001266 Phosphatidylinositol mannoside penta-mannose (tuberculosis) + 0.001403 Phosphatidylinositol mannoside tetra-mannose (tuberculosis) + 0.001573 Phosphatidylinositol mannoside tri-mannose (tuberculosis) + 0.001154 PIM6 + 0.031756 L-tyrosine + 0.006407 1,2-sn-glycerol 3-phosphate + 0.001176 Tetanus antitoxin + 0.001008 undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + 0.001251 Penta-acyl trehalose + 0.0152 NAD(+) + 0.001211 Acyl phosphatidylinositol mannoside tetra-mannose (tuberculosis) + 0.000731 Arabinan-arabinofuranose-galactofuranosyl(30)-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate (M tb) + 0.23515 hexadecanoate + 0.0295 C78-alpha-mycolate-PP + 0.0064 Hydroxyphthioceranoyl-CoA + 0.24365 GMP + 0.0088 UTP + 0.0347 (S)-S-adenosyl-L-methionine + 0.25095 CMP + 0.00613 Phosphatidylglycerol (hexadecanoyl, methylstearoyl) + 0.0168 GTP + 0.0168 CTP + 0.0008 (6S)-5,6,7,8-tetrahydrofolate + 0.0001 GDP-alpha-D-mannose + 0.0008 siroheme + 0.40596 L-alanine + 0.23018 N-acetyl-alpha-D-glucosamine 1-phosphate + 0.095065 D-mannose + 0.0222 FMN + 0.0129 FAD + 0.00797 alpha,alpha-trehalose + 0.03909 L-lysine + 0.20471 L-Leucine + 0.095802 10-methylstearic acid + 0.002793 UDP-N-acetyl-alpha-D-muramate + 0.009849 (9Z)-octadecenoate + 0.0008 Fe(II)-heme o + 0.074917 L-histidine + 0.047699 L-asparagine + 0.01094 (9Z)-hexadecenoate + 0.021723 D-ribose + 0.12031 L-aspartate + 0.001274 Di-acyl phosphatidylinositol mannoside di-mannose (tuberculosis) + 0.16315 D-glucose + 0.13803 L-proline + 0.00581 Phosphatidylglycerol (dimethylstearoyl, C19:0) + 0.001106 Tetramycolyl hexaarabinoside (tdm1 + tdm2 +tre) (Mtb) + 0.0011 Tetramycolyl hexaarabinoside (tdm1 + tdm3 + tre) (Mtb) + 0.001104 Tetramycolyl hexaarabinoside (tdm1 + tdm4 + tre) (Mtb) + 0.001097 Tetramycolyl hexaarabinoside (tdm2 + tdm3 + tre) (Mtb) cytoplasm	<?>	1 BIOMASS + 60 ADP + 60 phosphate cytoplasm	NA
	0.000977 Undecaprenyl-diphospho-N-glycolylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala + 0.01885 Peptidoglycan subunit (for Mycobacterium tuberculosis) + 60 H2O + 0.058352 hexacosanoate + 1e-06 menaquinol-8 + 0.034837 octadecanoate + 0.015676 eicosanoate + 0.335808 glycine + 0.012193 tetradecanoate + 0.004061 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine + 60 ATP + 0.006474 2-O-sulfo-alpha,alpha-trehalose + 0.003492 dAMP + 0.001488 Acyl phosphatidylinositol mannoside di-mannose (tuberculosis) + 0.006491 alpha,alpha-trehalose 6-phosphate + 0.006798 1,2-sn-glycerol 3-phosphate + 0.005859 Cardiolipin (dihexadecanoyl, dimethylstearoyl) + 1e-06 NADP(+) + 0.001681 a 1,2-diacyl-sn-glycero-3-phospho-[alpha-D-6-acyl-mannopyranosyl-(1<->6)-D-myo-inositol] + 0.001335 Acyl phosphatidylinositol mannoside tri-mannose (tuberculosis) + 0.001008 Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine + 0.00724 1,2-dihexadecanoyl-sn-glycero-3-phosphate + 0.025359 glycerol + 0.006487 dipalmitoyl phosphatidylglycerol + 0.000986 Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala + 0.00784 Methyl behenic acid + 0.01885 Peptidoglycan subunit (for Mycobacterium tuberculosis) + 0.006453 Phenol palmitic acid + 0.001266 Phosphatidylinositol mannoside penta-mannose (tuberculosis) + 0.001403 Phosphatidylinositol mannoside tetra-mannose (tuberculosis) + 0.001573 Phosphatidylinositol mannoside tri-mannose (tuberculosis) + 0.001154 PIM6 + 0.006407 1,2-sn-glycerol 3-phosphate + 0.001176 Tetanus antitoxin + 0.001008 undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + 0.001251 Penta-acyl trehalose + 1e-06 NAD(+) + 0.00179 PIM2 + 1e-06 alpha-D-glucosamine 6-phosphate + 0.001211 Acyl phosphatidylinositol mannoside tetra-mannose (tuberculosis) + 0.131604 UMP + 0.055474 alpha-D-galactose + 1e-06 trans,octa-cis-decaprenylphospho-beta-D-ribofuranose 5-phosphate + 1e-06 undecaprenyl diphosphate + 0.001498 Iron(III) chelated carboxymycobactin T (R=8 carbon, final carbon is carboxyl group) + 0.001184 Phenolic glycolipid (Mtb) + 0.002076 Phosphatidylinositol mannoside (tuberculosis) + 1e-06 heme b + 0.003653 dTMP + 0.006663 dCMP + 0.000731 Arabinan-arabinofuranose-galactofuranosyl(30)-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate (M tb) + 1e-06 riboflavin + 1e-06 Na(+) + 1e-06 7,8-dihydrofolate + 1e-06 (R)-4'-phosphopantetheine + 0.003291 Keto mycolate (1 cyclopropanated rings) + 1e-06 hydroxymethylbilane + 1e-06 quinolinate + 0.000263 Phenol phthiocerol dimycocerosate (Mtb) + 0.011003 mycolate + 0.139026 AMP + 0.235152 hexadecanoate + 1e-06 thiamine + 0.006659 dGMP + 0.001402 Mycobactin S + 0.003338 Keto mycolate (2 cyclopropanated rings) + 0.003365 Methoxy mycolate (1 cyclopropanated ring) + 0.000273 Phthiocerol dimycocerosate A (Mtb) + 0.001137 sulfolipid I + 1e-06 K(+) + 1e-06 trans,octa-cis-decaprenylphospho-beta-D-arabinofuranose + 0.405957 UNK:M_ala_L + 0.120416 UNK:M_arg_L + 0.047699 UNK:M_asn_L + 0.120308 UNK:M_asp_L + 0.022 UNK:M_cys_L + 0.163152 UNK:M_glc_D + 0.05812 UNK:M_gln_L + 0.090007 UNK:M_glu_L + 0.040617 UNK:M_his_L + 0.087731 UNK:M_ile_L + 0.204706 UNK:M_leu_L + 0.03909 UNK:M_lys_L + 0.034889 UNK:M_met_L + 0.048102 UNK:M_phe_L + 0.138034 UNK:M_pro_L + 0.021723 UNK:M_rib_D + 0.143397 UNK:M_ser_L + 0.135712 UNK:M_thr_L + 0.020124 UNK:M_trp_L + 0.031756 UNK:M_tyr_L + 0.205827 UNK:M_val_L + 0.243651 GMP + 0.250951 CMP + 0.00613 Phosphatidylglycerol (hexadecanoyl, methylstearoyl) + 1e-06 (6S)-5,6,7,8-tetrahydrofolate + 0.230181 N-acetyl-alpha-D-glucosamine 1-phosphate + 0.095065 D-mannose + 1e-06 FMN + 0.00797 alpha,alpha-trehalose + 0.095802 10-methylstearic acid + 0.002793 UDP-N-acetyl-alpha-D-muramate + 0.009849 (9Z)-octadecenoate + 0.01094 (9Z)-hexadecenoate + 0.001274 Di-acyl phosphatidylinositol mannoside di-mannose (tuberculosis) + 0.00581 Phosphatidylglycerol (dimethylstearoyl, C19:0) + 0.001106 Tetramycolyl hexaarabinoside (tdm1 + tdm2 +tre) (Mtb) + 0.0011 Tetramycolyl hexaarabinoside (tdm1 + tdm3 + tre) (Mtb) + 0.001104 Tetramycolyl hexaarabinoside (tdm1 + tdm4 + tre) (Mtb) + 0.001097 Tetramycolyl hexaarabinoside (tdm2 + tdm3 + tre) (Mtb) cytoplasm	<?>	1 BIOMASS + 60 ADP + 60 phosphate cytoplasm	NA

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