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MetaNetX
Automated Model Construction and Genome Annotation for Large-Scale Metabolic Networks
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SystemsX.ch
The Swiss Initiative in Systems Biology
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Summary
Pick from repository
Import model
Upload reactions
Delete models
Upload genome
Revived!
Analyze
Flux balance (FBA)
Groups of coupled reactions (GCR)
Blocked reactions (BLO)
Reaction knockout (RKO)
Gene/peptide knockout (PKO)
Create / Modify
Combine logically
Split and merge
Growth recovery (GRE)
Build from a genome (BUILD)
Revived!
Utilities
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MNXref ID mapper
new
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Documents
Getting started
A short tutorial
Model internals
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help [AT] metanetx.org
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Reactions with MNXM7416
Add selected reac/enzy to a model in my sandbow, or create a new one
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MNXref ID
Enzy
1
UNK:M_hslac
+
1
heptanoate
periplasmic space
<--
1
H2O
+
1
UNK:M_hepthslac
periplasmic space
NA
Q8XWC7_RALSO
-- Select --
Q8XWC7_RALSO
1
heptanoate
extracellular region
<=>
1
heptanoate
cytoplasm
MNXR178699
11000_AT1
CD36_HUMAN
FABP4_HUMAN
FABP5_HUMAN
FABP6_HUMAN
FABP7_HUMAN
FABP9_HUMAN
FABPH_HUMAN
FABPI_HUMAN
FABPL_HUMAN
FBP12_HUMAN
S27A1_HUMAN
S27A3_HUMAN
S27A4_HUMAN
S27A6_HUMAN
-- Select --
11000_AT1
CD36_HUMAN
FABP4_HUMAN
FABP5_HUMAN
FABP6_HUMAN
FABP7_HUMAN
FABP9_HUMAN
FABPH_HUMAN
FABPI_HUMAN
FABPL_HUMAN
FBP12_HUMAN
S27A1_HUMAN
S27A3_HUMAN
S27A4_HUMAN
S27A6_HUMAN
1
heptanoate
extracellular region
<=>
1
heptanoate
model boundary
MNXR178699
e0169
-- Select --
e0169
1
heptanoyl-CoA
+
1
diphosphate
+
1
AMP
cytoplasm
<?>
1
heptanoate
+
1
ATP
+
1
CoA
cytoplasm
MNXR189488
ACS2A_HUMAN
ACS2B_HUMAN
ACSM1_HUMAN
ACSM3_HUMAN
ACSM4_HUMAN
ACSM5_HUMAN
-- Select --
ACS2A_HUMAN
ACS2B_HUMAN
ACSM1_HUMAN
ACSM3_HUMAN
ACSM4_HUMAN
ACSM5_HUMAN
1
heptanoate
periplasmic space
<=>
1
heptanoate
extracellular region
MNXR178699
d0047
-- Select --
d0047
1
hexanoate
+
1
pentanoate
+
1
butanoate
+
1
heptanoate
+
1
octanoate
+
1
decanoate
+
1
nonanoate
+
1
undecanoate
extracellular region
<?>
8
Smcfa-Blood-Pool
extracellular region
MNXR158247
1
NADH
+
2
H(+)
+
1
heptanoate
generic compartment 1
<=>
1
heptanal
+
1
NAD(+)
+
1
H2O
generic compartment 1
MNXR95759
AL3A2_HUMAN
AL3A2_MOUSE
AL3A2_RAT
-- Select --
AL3A2_HUMAN
AL3A2_MOUSE
AL3A2_RAT
1
hexanoate
+
1
pentanoate
+
1
butanoate
+
1
heptanoate
+
1
octanoate
+
1
decanoate
+
1
nonanoate
+
1
undecanoate
extracellular region
<?>
8
UNK:MAM02909
extracellular region
NA
1
NADH
+
2
H(+)
+
1
heptanoate
cytoplasm
<--
1
heptanal
+
1
NAD(+)
+
1
H2O
cytoplasm
MNXR95759
ALDH3_BACSU
ALDH4_BACSU
ALDY_BACSU
Q8XWX0_RALSO
Q8XXK3_RALSO
-- Select --
ALDH3_BACSU
ALDH4_BACSU
ALDY_BACSU
Q8XWX0_RALSO
Q8XXK3_RALSO
1
heptanoyl-CoA
+
1
diphosphate
+
1
AMP
generic compartment 1
<=>
1
heptanoate
+
1
ATP
+
1
CoA
generic compartment 1
MNXR189488
4CLL6_ARATH
4CLL7_ARATH
LCF2_YEAST
-- Select --
4CLL6_ARATH
4CLL7_ARATH
LCF2_YEAST
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