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MetaNetX
Automated Model Construction and Genome Annotation for Large-Scale Metabolic Networks
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SystemsX.ch
The Swiss Initiative in Systems Biology
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Summary
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Flux balance (FBA)
Groups of coupled reactions (GCR)
Blocked reactions (BLO)
Reaction knockout (RKO)
Gene/peptide knockout (PKO)
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Growth recovery (GRE)
Build from a genome (BUILD)
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A short tutorial
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Enzy
125
UNK:M_RipAB
+
125
a tRNAPhe
+
125
a tRNACys
+
72297
ADP
+
1375
a tRNAGln
+
1750
a tRNAAla
+
2625
a tRNAGly
+
1250
a tRNAPro
+
125
a tRNATyr
+
1000
a tRNAArg
+
3125
tRNAasp
+
125
a tRNATrp
+
375
a tRNAHis
+
625
a tRNAIle
+
875
a tRNALeu
+
2125
a tRNALys
+
625
elongator tRNAMet
+
1625
a tRNAThr
+
375
a tRNAVal
+
750
a tRNAglu
+
3000
a tRNAser
+
72297
phosphate
cytoplasm
<--
72297
ATP
+
125
L-Cysteinyl-tRNA(Cys)
+
2125
L-Aspartyl-tRNA(Asp)
+
750
L-Glutamyl-tRNA(Glu)
+
1250
L-Prolyl-tRNA(Pro)
+
875
L-Leucyl-tRNA(Leu)
+
1000
L-Asparaginyl-tRNA(Asn)
+
2625
Glycyl-tRNA(Gly)
+
125
L-Tryptophanyl-tRNA(Trp)
+
1375
L-Glutaminyl-tRNA(Gln)
+
1750
L-Alanyl-tRNA(Ala)
+
125
L-Tyrosyl-tRNA(Tyr)
+
375
L-Histidyl-tRNA(His)
+
625
L-Isoleucyl-tRNA(Ile)
+
1000
L-Arginyl-tRNA(Arg)
+
1625
L-Threonyl-tRNA(Thr)
+
2125
L-Lysine-tRNA (Lys)
+
375
L-Valyl-tRNA(Val)
+
625
L-Methionyl-tRNA (Met)
+
3000
L-Seryl-tRNA(Ser)
+
72297
H2O
+
125
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
POPB_RALSO
-- Select --
POPB_RALSO
875
a tRNAPhe
+
125
a tRNACys
+
122988
ADP
+
2125
a tRNAGln
+
4625
a tRNAAla
+
2375
a tRNAGly
+
2375
a tRNAPro
+
250
a tRNATyr
+
2750
a tRNAArg
+
2250
tRNAasp
+
250
a tRNATrp
+
1750
a tRNAHis
+
750
a tRNAIle
+
2375
a tRNALeu
+
1750
a tRNALys
+
750
elongator tRNAMet
+
2000
a tRNAThr
+
2250
a tRNAVal
+
3125
a tRNAglu
+
4375
a tRNAser
+
122988
phosphate
+
125
UNK:M_RipU2
cytoplasm
<--
122988
ATP
+
125
L-Cysteinyl-tRNA(Cys)
+
1375
L-Aspartyl-tRNA(Asp)
+
3125
L-Glutamyl-tRNA(Glu)
+
2375
L-Prolyl-tRNA(Pro)
+
2375
L-Leucyl-tRNA(Leu)
+
875
L-Asparaginyl-tRNA(Asn)
+
2375
Glycyl-tRNA(Gly)
+
250
L-Tryptophanyl-tRNA(Trp)
+
2125
L-Glutaminyl-tRNA(Gln)
+
4625
L-Alanyl-tRNA(Ala)
+
250
L-Tyrosyl-tRNA(Tyr)
+
1750
L-Histidyl-tRNA(His)
+
750
L-Isoleucyl-tRNA(Ile)
+
2750
L-Arginyl-tRNA(Arg)
+
2000
L-Threonyl-tRNA(Thr)
+
1750
L-Lysine-tRNA (Lys)
+
2250
L-Valyl-tRNA(Val)
+
750
L-Methionyl-tRNA (Met)
+
4375
L-Seryl-tRNA(Ser)
+
122988
H2O
+
875
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XQL0_RALSO
-- Select --
Q8XQL0_RALSO
975
a tRNAPhe
+
125
a tRNACys
+
103044
ADP
+
1475
a tRNAGln
+
4850
a tRNAAla
+
2650
a tRNAGly
+
1675
a tRNAPro
+
350
a tRNATyr
+
2500
a tRNAArg
+
2525
tRNAasp
+
250
a tRNATrp
+
825
a tRNAHis
+
825
a tRNAIle
+
2475
a tRNALeu
+
1175
a tRNALys
+
825
elongator tRNAMet
+
2175
a tRNAThr
+
1700
a tRNAVal
+
1475
a tRNAglu
+
2150
a tRNAser
+
103044
phosphate
+
25
UNK:M_RipA5
cytoplasm
<--
103044
ATP
+
125
L-Cysteinyl-tRNA(Cys)
+
1675
L-Aspartyl-tRNA(Asp)
+
1475
L-Glutamyl-tRNA(Glu)
+
1675
L-Prolyl-tRNA(Pro)
+
2475
L-Leucyl-tRNA(Leu)
+
850
L-Asparaginyl-tRNA(Asn)
+
2650
Glycyl-tRNA(Gly)
+
250
L-Tryptophanyl-tRNA(Trp)
+
1475
L-Glutaminyl-tRNA(Gln)
+
4850
L-Alanyl-tRNA(Ala)
+
350
L-Tyrosyl-tRNA(Tyr)
+
825
L-Histidyl-tRNA(His)
+
825
L-Isoleucyl-tRNA(Ile)
+
2500
L-Arginyl-tRNA(Arg)
+
2175
L-Threonyl-tRNA(Thr)
+
1175
L-Lysine-tRNA (Lys)
+
1700
L-Valyl-tRNA(Val)
+
825
L-Methionyl-tRNA (Met)
+
2150
L-Seryl-tRNA(Ser)
+
103044
H2O
+
975
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XR44_RALSO
-- Select --
Q8XR44_RALSO
175
a tRNAPhe
+
50
a tRNACys
+
9141
ADP
+
250
a tRNAGln
+
325
a tRNAAla
+
150
a tRNAGly
+
25
a tRNAPro
+
75
a tRNATyr
+
150
a tRNAArg
+
250
tRNAasp
+
50
a tRNATrp
+
50
a tRNAHis
+
100
a tRNAIle
+
125
a tRNALeu
+
100
a tRNALys
+
75
elongator tRNAMet
+
375
a tRNAThr
+
200
a tRNAVal
+
25
a tRNAglu
+
225
a tRNAser
+
9141
phosphate
+
25
UNK:M_CbhA
cytoplasm
<--
9141
ATP
+
50
L-Cysteinyl-tRNA(Cys)
+
50
L-Aspartyl-tRNA(Asp)
+
25
L-Glutamyl-tRNA(Glu)
+
25
L-Prolyl-tRNA(Pro)
+
125
L-Leucyl-tRNA(Leu)
+
200
L-Asparaginyl-tRNA(Asn)
+
150
Glycyl-tRNA(Gly)
+
50
L-Tryptophanyl-tRNA(Trp)
+
250
L-Glutaminyl-tRNA(Gln)
+
325
L-Alanyl-tRNA(Ala)
+
75
L-Tyrosyl-tRNA(Tyr)
+
50
L-Histidyl-tRNA(His)
+
100
L-Isoleucyl-tRNA(Ile)
+
150
L-Arginyl-tRNA(Arg)
+
375
L-Threonyl-tRNA(Thr)
+
100
L-Lysine-tRNA (Lys)
+
200
L-Valyl-tRNA(Val)
+
75
L-Methionyl-tRNA (Met)
+
225
L-Seryl-tRNA(Ser)
+
9141
H2O
+
175
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XS97_RALSO
-- Select --
Q8XS97_RALSO
5500
a tRNAPhe
+
2750
a tRNACys
+
637377
ADP
+
6250
a tRNAGln
+
30750
a tRNAAla
+
25750
a tRNAGly
+
6000
a tRNAPro
+
8750
a tRNATyr
+
7500
a tRNAArg
+
18000
tRNAasp
+
4500
a tRNATrp
+
5000
a tRNAHis
+
6500
a tRNAIle
+
14000
a tRNALeu
+
2750
a tRNALys
+
2500
elongator tRNAMet
+
17000
a tRNAThr
+
10750
a tRNAVal
+
5000
a tRNAglu
+
12500
a tRNAser
+
637377
phosphate
+
250
UNK:M_RSp0881
cytoplasm
<--
637377
ATP
+
2750
L-Cysteinyl-tRNA(Cys)
+
8500
L-Aspartyl-tRNA(Asp)
+
5000
L-Glutamyl-tRNA(Glu)
+
6000
L-Prolyl-tRNA(Pro)
+
14000
L-Leucyl-tRNA(Leu)
+
9500
L-Asparaginyl-tRNA(Asn)
+
25750
Glycyl-tRNA(Gly)
+
4500
L-Tryptophanyl-tRNA(Trp)
+
6250
L-Glutaminyl-tRNA(Gln)
+
30750
L-Alanyl-tRNA(Ala)
+
8750
L-Tyrosyl-tRNA(Tyr)
+
5000
L-Histidyl-tRNA(His)
+
6500
L-Isoleucyl-tRNA(Ile)
+
7500
L-Arginyl-tRNA(Arg)
+
17000
L-Threonyl-tRNA(Thr)
+
2750
L-Lysine-tRNA (Lys)
+
10750
L-Valyl-tRNA(Val)
+
2500
L-Methionyl-tRNA (Met)
+
12500
L-Seryl-tRNA(Ser)
+
637377
H2O
+
5500
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XRH3_RALSO
-- Select --
Q8XRH3_RALSO
250
UNK:M_RSc0249
+
10250
a tRNAPhe
+
250
a tRNACys
+
1245669
ADP
+
11500
a tRNAGln
+
32000
a tRNAAla
+
58000
a tRNAGly
+
7750
a tRNAPro
+
17250
a tRNATyr
+
15500
a tRNAArg
+
72750
tRNAasp
+
4250
a tRNATrp
+
3500
a tRNAHis
+
14500
a tRNAIle
+
32750
a tRNALeu
+
6250
a tRNALys
+
2500
elongator tRNAMet
+
30500
a tRNAThr
+
19750
a tRNAVal
+
10500
a tRNAglu
+
25250
a tRNAser
+
1245669
phosphate
cytoplasm
<--
1245669
ATP
+
250
L-Cysteinyl-tRNA(Cys)
+
46000
L-Aspartyl-tRNA(Asp)
+
10500
L-Glutamyl-tRNA(Glu)
+
7750
L-Prolyl-tRNA(Pro)
+
32750
L-Leucyl-tRNA(Leu)
+
26750
L-Asparaginyl-tRNA(Asn)
+
58000
Glycyl-tRNA(Gly)
+
4250
L-Tryptophanyl-tRNA(Trp)
+
11500
L-Glutaminyl-tRNA(Gln)
+
32000
L-Alanyl-tRNA(Ala)
+
17250
L-Tyrosyl-tRNA(Tyr)
+
3500
L-Histidyl-tRNA(His)
+
14500
L-Isoleucyl-tRNA(Ile)
+
15500
L-Arginyl-tRNA(Arg)
+
30500
L-Threonyl-tRNA(Thr)
+
6250
L-Lysine-tRNA (Lys)
+
19750
L-Valyl-tRNA(Val)
+
2500
L-Methionyl-tRNA (Met)
+
25250
L-Seryl-tRNA(Ser)
+
1245669
H2O
+
10250
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8Y2T5_RALSO
-- Select --
Q8Y2T5_RALSO
375
a tRNAPhe
+
125
a tRNACys
+
34902
ADP
+
350
a tRNAGln
+
1425
a tRNAAla
+
1175
a tRNAGly
+
450
a tRNAPro
+
400
a tRNATyr
+
400
a tRNAArg
+
1125
tRNAasp
+
400
a tRNATrp
+
75
a tRNAHis
+
225
a tRNAIle
+
775
a tRNALeu
+
300
a tRNALys
+
275
elongator tRNAMet
+
850
a tRNAThr
+
700
a tRNAVal
+
250
a tRNAglu
+
825
a tRNAser
+
34902
phosphate
+
25
UNK:M_Egl
cytoplasm
<--
34902
ATP
+
125
L-Cysteinyl-tRNA(Cys)
+
400
L-Aspartyl-tRNA(Asp)
+
250
L-Glutamyl-tRNA(Glu)
+
450
L-Prolyl-tRNA(Pro)
+
775
L-Leucyl-tRNA(Leu)
+
725
L-Asparaginyl-tRNA(Asn)
+
1175
Glycyl-tRNA(Gly)
+
400
L-Tryptophanyl-tRNA(Trp)
+
350
L-Glutaminyl-tRNA(Gln)
+
1425
L-Alanyl-tRNA(Ala)
+
400
L-Tyrosyl-tRNA(Tyr)
+
75
L-Histidyl-tRNA(His)
+
225
L-Isoleucyl-tRNA(Ile)
+
400
L-Arginyl-tRNA(Arg)
+
850
L-Threonyl-tRNA(Thr)
+
300
L-Lysine-tRNA (Lys)
+
700
L-Valyl-tRNA(Val)
+
275
L-Methionyl-tRNA (Met)
+
825
L-Seryl-tRNA(Ser)
+
34902
H2O
+
375
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
GUN_RALSO
-- Select --
GUN_RALSO
250
UNK:M_RSc3151
+
7500
a tRNAPhe
+
500
a tRNACys
+
587517
ADP
+
5250
a tRNAGln
+
21500
a tRNAAla
+
16250
a tRNAGly
+
11500
a tRNAPro
+
6250
a tRNATyr
+
12750
a tRNAArg
+
16000
tRNAasp
+
2250
a tRNATrp
+
2750
a tRNAHis
+
7500
a tRNAIle
+
16000
a tRNALeu
+
3500
a tRNALys
+
3000
elongator tRNAMet
+
11000
a tRNAThr
+
13250
a tRNAVal
+
7250
a tRNAglu
+
12750
a tRNAser
+
587517
phosphate
cytoplasm
<--
587517
ATP
+
500
L-Cysteinyl-tRNA(Cys)
+
9250
L-Aspartyl-tRNA(Asp)
+
7250
L-Glutamyl-tRNA(Glu)
+
11500
L-Prolyl-tRNA(Pro)
+
16000
L-Leucyl-tRNA(Leu)
+
6750
L-Asparaginyl-tRNA(Asn)
+
16250
Glycyl-tRNA(Gly)
+
2250
L-Tryptophanyl-tRNA(Trp)
+
5250
L-Glutaminyl-tRNA(Gln)
+
21500
L-Alanyl-tRNA(Ala)
+
6250
L-Tyrosyl-tRNA(Tyr)
+
2750
L-Histidyl-tRNA(His)
+
7500
L-Isoleucyl-tRNA(Ile)
+
12750
L-Arginyl-tRNA(Arg)
+
11000
L-Threonyl-tRNA(Thr)
+
3500
L-Lysine-tRNA (Lys)
+
13250
L-Valyl-tRNA(Val)
+
3000
L-Methionyl-tRNA (Met)
+
12750
L-Seryl-tRNA(Ser)
+
587517
H2O
+
7500
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XUN6_RALSO
-- Select --
Q8XUN6_RALSO
125
UNK:M_PehB
+
3875
a tRNAPhe
+
625
a tRNACys
+
291681
ADP
+
2125
a tRNAGln
+
10625
a tRNAAla
+
9250
a tRNAGly
+
3000
a tRNAPro
+
2875
a tRNATyr
+
5000
a tRNAArg
+
11875
tRNAasp
+
875
a tRNATrp
+
1375
a tRNAHis
+
3125
a tRNAIle
+
5375
a tRNALeu
+
2375
a tRNALys
+
1875
elongator tRNAMet
+
8625
a tRNAThr
+
6125
a tRNAVal
+
2000
a tRNAglu
+
6750
a tRNAser
+
291681
phosphate
cytoplasm
<--
291681
ATP
+
625
L-Cysteinyl-tRNA(Cys)
+
6125
L-Aspartyl-tRNA(Asp)
+
2000
L-Glutamyl-tRNA(Glu)
+
3000
L-Prolyl-tRNA(Pro)
+
5375
L-Leucyl-tRNA(Leu)
+
5750
L-Asparaginyl-tRNA(Asn)
+
9250
Glycyl-tRNA(Gly)
+
875
L-Tryptophanyl-tRNA(Trp)
+
2125
L-Glutaminyl-tRNA(Gln)
+
10625
L-Alanyl-tRNA(Ala)
+
2875
L-Tyrosyl-tRNA(Tyr)
+
1375
L-Histidyl-tRNA(His)
+
3125
L-Isoleucyl-tRNA(Ile)
+
5000
L-Arginyl-tRNA(Arg)
+
8625
L-Threonyl-tRNA(Thr)
+
2375
L-Lysine-tRNA (Lys)
+
6125
L-Valyl-tRNA(Val)
+
1875
L-Methionyl-tRNA (Met)
+
6750
L-Seryl-tRNA(Ser)
+
291681
H2O
+
3875
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XYK2_RALSO
-- Select --
Q8XYK2_RALSO
550
a tRNAPhe
+
300
a tRNACys
+
100551
ADP
+
1300
a tRNAGln
+
4950
a tRNAAla
+
2100
a tRNAGly
+
2900
a tRNAPro
+
250
a tRNATyr
+
2650
a tRNAArg
+
2750
tRNAasp
+
300
a tRNATrp
+
1350
a tRNAHis
+
900
a tRNAIle
+
3650
a tRNALeu
+
250
a tRNALys
+
550
elongator tRNAMet
+
1650
a tRNAThr
+
1000
a tRNAVal
+
1350
a tRNAglu
+
1500
a tRNAser
+
100551
phosphate
+
50
UNK:M_RipAR
cytoplasm
<--
100551
ATP
+
300
L-Cysteinyl-tRNA(Cys)
+
1650
L-Aspartyl-tRNA(Asp)
+
1350
L-Glutamyl-tRNA(Glu)
+
2900
L-Prolyl-tRNA(Pro)
+
3650
L-Leucyl-tRNA(Leu)
+
1100
L-Asparaginyl-tRNA(Asn)
+
2100
Glycyl-tRNA(Gly)
+
300
L-Tryptophanyl-tRNA(Trp)
+
1300
L-Glutaminyl-tRNA(Gln)
+
4950
L-Alanyl-tRNA(Ala)
+
250
L-Tyrosyl-tRNA(Tyr)
+
1350
L-Histidyl-tRNA(His)
+
900
L-Isoleucyl-tRNA(Ile)
+
2650
L-Arginyl-tRNA(Arg)
+
1650
L-Threonyl-tRNA(Thr)
+
250
L-Lysine-tRNA (Lys)
+
1000
L-Valyl-tRNA(Val)
+
550
L-Methionyl-tRNA (Met)
+
1500
L-Seryl-tRNA(Ser)
+
100551
H2O
+
550
L-Phenylalanyl-tRNA(Phe)
cytoplasm
NA
Q8XQI9_RALSO
-- Select --
Q8XQI9_RALSO
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